Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs56413514 | chr8:135640669 | G/A | 2.0E-6 | 177 | 15.57 | 15.13 | 3.43 | KM Plot |
| PAAD | rs56685146 | chr2:70473937 | A/G | 0 | 177 | 15.3 | 18.43 | 1.03 | KM Plot |
| PAAD | rs567054 | chr6:44867254 | T/C | 8.88E-5 | 178 | 11.98 | 16.17 | 16.07 | KM Plot |
| PAAD | rs56722585 | chr17:40311052 | C/CT | 8.84E-5 | 177 | 15.57 | 13.8 | 4 | KM Plot |
| PAAD | rs56756422 | chr2:181618966 | GCACTTACATGAA/G | 4.26E-5 | 174 | 15.43 | 16.6 | 4.68 | KM Plot |
| PAAD | rs56833582 | chr2:70489705 | T/C | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs57009805 | chr2:70471914 | C/G | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs57021647 | chr19:5205658 | G/C | 5.79E-6 | 172 | 15.37 | 15.43 | 3.67 | KM Plot |
| PAAD | rs57429328 | chr7:102653127 | C/G | 7.82E-8 | 177 | 16.13 | 12.2 | 3.43 | KM Plot |
| PAAD | rs5744897 | chr12:133226831 | C/T | 8.41E-13 | 178 | 15.4 | 15.67 | 1.37 | KM Plot |
| PAAD | rs5745412 | chr1:76314659 | A/G | 3.97E-6 | 171 | 16.03 | 12.6 | 3.67 | KM Plot |
| PAAD | rs57498556 | chr2:128518178 | T/A | 7.9E-10 | 178 | 15.62 | 12.6 | 2.2 | KM Plot |
| PAAD | rs57498855 | chr1:16307380 | AAAATAAATAAATAAAT/A | 1.76E-6 | 176 | 3.43 | 14.57 | 15.57 | KM Plot |
| PAAD | rs57507075 | chr10:9857220 | T/TCACA | 0 | 177 | 15.48 | 15.8 | 0.4 | KM Plot |
| PAAD | rs57562721 | chr17:26894420 | TA/T | 1.57E-5 | 172 | 15.48 | 16.07 | 3.67 | KM Plot |